Difference between revisions of "MicroRNA finder (analysis)"
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==== Description ==== | ==== Description ==== | ||
| − | Finds novel microRNA from genomic alignments of NGS reads | + | Finds novel microRNA from genomic alignments of NGS reads. |
==== Parameters: ==== | ==== Parameters: ==== | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:MicroRNA (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
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Latest revision as of 18:15, 9 December 2020
- Analysis title
MicroRNA finder
- Provider
- Institute of Systems Biology
- Class
MicroRNAFinder- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
Finds novel microRNA from genomic alignments of NGS reads.
[edit] Parameters:
- Alignments – Genomic alignments of microRNA reads
- Genome – Reference genome used for alignment
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Minimal cluster size – Minimal number of reads in cluster
- Maximum read distance – Maxim distance between adjacent reads in cluster
- Clusters – Resulting read clusters
- Primary isoforms – Resulting primary microRNA isoforms
- Longest isoforms – Resulting longest microRNA isoforms
