Difference between revisions of "Make GTF for riboseq alignment (analysis)"
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==== Description ==== | ==== Description ==== | ||
| − | + | Creates GTF file from Ensembl database, suitable for riboseq alignment. | |
==== Parameters: ==== | ==== Parameters: ==== | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Ribosome profiling (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
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Latest revision as of 18:15, 9 December 2020
- Analysis title
Make GTF for riboseq alignment
- Provider
- Institute of Systems Biology
- Class
GTFForRiboseqAlignment- Plugin
- biouml.plugins.riboseq (RiboSeq Experiment)
[edit] Description
Creates GTF file from Ensembl database, suitable for riboseq alignment.
[edit] Parameters:
- Transcript set – Set of transcripts to output into GTF file
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Genome sequence – Collection of chromosomal sequences
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- GTF file – GTF file
- Min UTR length – Extend untranlsated regions to this length
- Only protein coding – Use only protein coding transcripts
- Resulting GTF – Resulting GTF file
