Make GTF for riboseq alignment (analysis)

Analysis title

Make GTF for riboseq alignment

Provider

Institute of Systems Biology

Class

GTFForRiboseqAlignment

Plugin

biouml.plugins.riboseq (RiboSeq Experiment)

Description

Convert BAM alignments on transcripts to alignments on genome

Parameters:

• Transcript set – Set of transcripts to output into GTF file
  • Annotation source – Source of gene annotation
  • Transcripts annotation track – Track with transcripts annotation in BED format
  • Genome sequence – Collection of chromosomal sequences
  • Ensembl – Ensembl database version
  • Transcript subset – Subset of transcripts used in this analysis
  • GTF file – GTF file
• Min UTR length – Extend untranlsated regions to this length
• Only protein coding – Use only protein coding transcripts
• Resulting GTF – Resulting GTF file