Difference between revisions of "Ru.biosoft.bsa (plugin)"

From BioUML platform
Jump to: navigation, search
(Default analysis icon as separate file)
(Automatic synchronization with BioUML)
Line 10: Line 10:
 
=== Analysis methods ===
 
=== Analysis methods ===
 
Analysis methods defined in this plugin:
 
Analysis methods defined in this plugin:
*[[File:Default-analysis-icon.png]] [[Analysis of Cis-Regulatory Modules (analysis)|Analysis of Cis-Regulatory Modules]]
 
*[[File:Default-analysis-icon.png]] [[Analysis of SNPs and Binding sites (analysis)|Analysis of SNPs and Binding sites]]
 
*[[File:Default-analysis-icon.png]] [[Analysis of five site models (analysis)|Analysis of five site models]]
 
*[[File:Default-analysis-icon.png]] [[Binding regions summary (analysis)|Binding regions summary]]
 
*[[File:Default-analysis-icon.png]] [[ChIP-Seq characteristics distribution (analysis)|ChIP-Seq characteristics distribution]]
 
 
*[[File:BSA-ChIP-seq-peak-profile-icon.png]] [[ChIP-seq peak profile (analysis)|ChIP-seq peak profile]]
 
*[[File:BSA-ChIP-seq-peak-profile-icon.png]] [[ChIP-seq peak profile (analysis)|ChIP-seq peak profile]]
 
*[[File:BSA-Change-profile-cutoffs-icon.png]] [[Change profile cutoffs (analysis)|Change profile cutoffs]]
 
*[[File:BSA-Change-profile-cutoffs-icon.png]] [[Change profile cutoffs (analysis)|Change profile cutoffs]]
 
*[[File:Default-analysis-icon.png]] [[Chromosome enrichment (analysis)|Chromosome enrichment]]
 
*[[File:Default-analysis-icon.png]] [[Chromosome enrichment (analysis)|Chromosome enrichment]]
*[[File:Default-analysis-icon.png]] [[Cis-module identification (analysis)|Cis-module identification]]
 
 
*[[File:Default-analysis-icon.png]] [[Compare site models (analysis)|Compare site models]]
 
*[[File:Default-analysis-icon.png]] [[Compare site models (analysis)|Compare site models]]
 
*[[File:BSA-Construct-IPS-CisModule-icon.png]] [[Construct IPS CisModule (analysis)|Construct IPS CisModule]]
 
*[[File:BSA-Construct-IPS-CisModule-icon.png]] [[Construct IPS CisModule (analysis)|Construct IPS CisModule]]
 
*[[File:BSA-Convert-site-models-to-proteins-icon.png]] [[Convert site models to proteins (analysis)|Convert site models to proteins]]
 
*[[File:BSA-Convert-site-models-to-proteins-icon.png]] [[Convert site models to proteins (analysis)|Convert site models to proteins]]
 
*[[File:BSA-Convert-table-to-track-icon.png]] [[Convert table to track (analysis)|Convert table to track]]
 
*[[File:BSA-Convert-table-to-track-icon.png]] [[Convert table to track (analysis)|Convert table to track]]
*[[File:Default-analysis-icon.png]] [[Count olig frequencies (analysis)|Count olig frequencies]]
 
 
*[[File:BSA-Create-IPS-model-icon.png]] [[Create IPS model (analysis)|Create IPS model]]
 
*[[File:BSA-Create-IPS-model-icon.png]] [[Create IPS model (analysis)|Create IPS model]]
 
*[[File:BSA-Create-Match-model-icon.png]] [[Create Match model (analysis)|Create Match model]]
 
*[[File:BSA-Create-Match-model-icon.png]] [[Create Match model (analysis)|Create Match model]]
*[[File:Default-analysis-icon.png]] [[Create matrix by mixture of normal components (analysis)|Create matrix by mixture of normal components]]
 
*[[File:Default-analysis-icon.png]] [[Create matrix by mixture of normal components (ChIP-seq) (analysis)|Create matrix by mixture of normal components (ChIP-seq)]]
 
 
*[[File:BSA-Create-profile-from-gene-table-icon.png]] [[Create profile from gene table (analysis)|Create profile from gene table]]
 
*[[File:BSA-Create-profile-from-gene-table-icon.png]] [[Create profile from gene table (analysis)|Create profile from gene table]]
 
*[[File:BSA-Create-profile-from-table-icon.png]] [[Create profile from table (analysis)|Create profile from table]]
 
*[[File:BSA-Create-profile-from-table-icon.png]] [[Create profile from table (analysis)|Create profile from table]]
 
*[[File:BSA-Create-weight-matrix-model-icon.png]] [[Create weight matrix model (analysis)|Create weight matrix model]]
 
*[[File:BSA-Create-weight-matrix-model-icon.png]] [[Create weight matrix model (analysis)|Create weight matrix model]]
*[[File:Default-analysis-icon.png]] [[Distinct TF classes (analysis)|Distinct TF classes]]
 
 
*[[File:Default-analysis-icon.png]] [[Extract ribosomal RNA (analysis)|Extract ribosomal RNA]]
 
*[[File:Default-analysis-icon.png]] [[Extract ribosomal RNA (analysis)|Extract ribosomal RNA]]
 
*[[File:BSA-Filter-one-track-by-another-icon.png]] [[Filter one track by another (analysis)|Filter one track by another]]
 
*[[File:BSA-Filter-one-track-by-another-icon.png]] [[Filter one track by another (analysis)|Filter one track by another]]
 
*[[File:BSA-Filter-track-by-condition-icon.png]] [[Filter track by condition (analysis)|Filter track by condition]]
 
*[[File:BSA-Filter-track-by-condition-icon.png]] [[Filter track by condition (analysis)|Filter track by condition]]
 
*[[File:Default-analysis-icon.png]] [[GC island finder (analysis)|GC island finder]]
 
*[[File:Default-analysis-icon.png]] [[GC island finder (analysis)|GC island finder]]
*[[File:Default-analysis-icon.png]] [[Gathering genome statistics (analysis)|Gathering genome statistics]]
 
 
*[[File:BSA-Gene-set-to-track-icon.png]] [[Gene set to track (analysis)|Gene set to track]]
 
*[[File:BSA-Gene-set-to-track-icon.png]] [[Gene set to track (analysis)|Gene set to track]]
 
*[[File:Default-analysis-icon.png]] [[Genome coverage (analysis)|Genome coverage]]
 
*[[File:Default-analysis-icon.png]] [[Genome coverage (analysis)|Genome coverage]]
 
*[[File:Default-analysis-icon.png]] [[Heterozygous site caller (analysis)|Heterozygous site caller]]
 
*[[File:Default-analysis-icon.png]] [[Heterozygous site caller (analysis)|Heterozygous site caller]]
*[[File:Default-analysis-icon.png]] [[IPS ROC-curves (analysis)|IPS ROC-curves]]
 
 
*[[File:BSA-IPS-motif-discovery-icon.png]] [[IPS motif discovery (analysis)|IPS motif discovery]]
 
*[[File:BSA-IPS-motif-discovery-icon.png]] [[IPS motif discovery (analysis)|IPS motif discovery]]
*[[File:Default-analysis-icon.png]] [[IPS prediction (analysis)|IPS prediction]]
 
 
*[[File:BSA-Join-tracks-icon.png]] [[Join tracks (analysis)|Join tracks]]
 
*[[File:BSA-Join-tracks-icon.png]] [[Join tracks (analysis)|Join tracks]]
*[[File:Default-analysis-icon.png]] [[Merge binding regions for cell-lines (analysis)|Merge binding regions for cell-lines]]
 
 
*[[File:Default-analysis-icon.png]] [[Merge track statistics (analysis)|Merge track statistics]]
 
*[[File:Default-analysis-icon.png]] [[Merge track statistics (analysis)|Merge track statistics]]
 
*[[File:Default-analysis-icon.png]] [[MicroRNA aligner (analysis)|MicroRNA aligner]]
 
*[[File:Default-analysis-icon.png]] [[MicroRNA aligner (analysis)|MicroRNA aligner]]
*[[File:Default-analysis-icon.png]] [[Mixture of normal components (analysis)|Mixture of normal components]]
 
 
*[[File:BSA-Motif-quality-analysis-icon.png]] [[Motif quality analysis]]
 
*[[File:BSA-Motif-quality-analysis-icon.png]] [[Motif quality analysis]]
*[[File:Default-analysis-icon.png]] [[Non-merged ChIP-Seq tracks summary (analysis)|Non-merged ChIP-Seq tracks summary]]
 
 
*[[File:Default-analysis-icon.png]] [[Preprocess raw reads (analysis)|Preprocess raw reads]]
 
*[[File:Default-analysis-icon.png]] [[Preprocess raw reads (analysis)|Preprocess raw reads]]
 
*[[File:BSA-Process-track-with-sites-icon.png]] [[Process track with sites (analysis)|Process track with sites]]
 
*[[File:BSA-Process-track-with-sites-icon.png]] [[Process track with sites (analysis)|Process track with sites]]

Revision as of 13:40, 17 June 2013

ID
ru.biosoft.bsa
Name
Bio-sequences analyses plugin
Provider
Institute of Systems Biology
Version
0.9.4

Contents

Analysis methods

Analysis methods defined in this plugin:

Importers

Data element importers for the following file formats are defined in this plugin:

Host objects

JavaScript host objects defined in this plugin:

Reference types

Reference types defined in this plugin:

Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox